Just had this same issue, tried to restart that chapter and go do it over even though ive already retrieved them. still didnt work, got caught in the first room because jack was not able to go through his access hole. The funny thing is that Paduk has dialogue for when you go up to the training facility before going to the get the rocket. he says something along the lines of, “I was going to have my scouts go pick up those beacons, but sense you’re there. go ahead and grab them.” If it’s supposed to be an open-world play the mission in whatever order you want to kinda act, then why are we hitting a bug where we cant proceed any further for doing a mission “out of order”?? Now i have to replay hours of content due to me doing missions apparently out of order…